I have a similar problem with my two Android tablets, and that might interfere with this cool idea to cancel Alerts from different units.
In my case, one of my tablets has a custom ROM on it that doesn't accept Multicast. It can send out a flight plan to share, but it can't receive it.
So when it comes to Flight Plans, I treat that tablet as the "Master" tablet, the other as a Slave. I do all my flight planning at home on the Master and I do all my rubber banding in flight on the Master.
That M/S paradigm won't work too well in the plane for Alerts because the Slave tablet is on my side (right side) of the plane. So I'm looking at it most of the time and I tend to see Alerts on it first. But unless there's another way than mulitcast to kill these things, I won't be able to cancel an Alert on my Master from my Slave.
Still, anything is better than nothing and if I can occasionally kill two Alerts with one tap, I'll take it.