If you haven't read through the thread I pointed to earlier, I recommend it: http://www.iflygps.com/Support/Forum/...ope/posts#34528. In one of the posts, it mentions that launching FltPlan GO will also change the Stratus 3 setting required to make iFly work, and FltPlan GO is avaialble on Android, so that may be an option.
Also, it's not clear that the setting needs to be changed every power cycle.
Regardless, it does seem like something of a hassle if you're not using their "preferred" app....